collection of functions used to perform analyses on data in MEDITS format


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Documentation for package ‘BioIndex’ version 0.5.02

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BioIndex BioIndex
bubbleplot_RS_by_hauls Bubbleplot of abundance indices for recruits and spawners
bubble_plot_by_haul_indexes Bubble plot of abundance and biomass indices by haul
centroidi centroidi
cgpmgrid cgpmgrid
check_date_haul Check date consistency
check_dictionary Check dictionary (RoME)
check_hauls_TBTA Check presence in TB of the hauls in TA
check_numeric_range Check consistency of numeric ranges
continent continent
convert_coordinates MEDITS coordinates in decimal degrees
dd.distance Estimate hauls distances (decimal degrees)
dd.to.MEDITS Conversion of decimal degrees coordinates in MEDITS format
hauls_position Plot of hauls time series
index_on_grid Generating maps of indexes
index_recr Estimation of abundance indices for recruits
index_spawn Estimation of abundance indices for spawners (females)
index_ts_F Estimation of abundance indices for females
index_ts_M Estimation of abundance indices for males
indices_ts Estimation of abundance and biomass indices
LFD Length Frequency Distribution
Lquant Estimation of L50 and L95
MEDITS.distance Estimation of haul distance
MEDITS.to.dd Conversion of MEDITS format coordinates in decimal degrees format
merge_TATBTC Merge Ta-TB and TA-TC tables
MIW Estimation of Mean Individual Weight (MIW) time series
overlayGrid Overlay mTATB and mTATC on GFCM spatial grid
quant Quantile estimation
sex_ratio Sex ratio
sex_ratio_on_grid Plot sex ratio spatial distribution
spear Spearman test for timeseries
spearman Spearman test
strata_scheme stratification scheme
stratification stratification
stratum_0_125 stratum_0_125
stratum_0_200 stratum_0_200
stratum_0_35 stratum_0_35
stratum_0_45 stratum_0_45
stratum_0_800 stratum_0_800
stratum_200_800 stratum_200_800
TA TA table example
TA_cols TA table headings
TB TB table example
TB_cols TB table headings
TC TC table example
TC_cols TC table headings